J3_9C3H_028
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU
- Length
- 20 nucleotides
- Bulged bases
- 9C3H|1|S2|A|46
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9C3H_028 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0505
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9C3H|1|S2|A|40
9C3H|1|S2|G|41
9C3H|1|S2|A|42
9C3H|1|S2|U|43
9C3H|1|S2|U|44
9C3H|1|S2|A|45
9C3H|1|S2|A|46
9C3H|1|S2|G|47
*
9C3H|1|S2|C|479
9C3H|1|S2|G|480
9C3H|1|S2|C|481
9C3H|1|S2|G|482
9C3H|1|S2|C|483
9C3H|1|S2|A2M|484
9C3H|1|S2|A|485
9C3H|1|S2|A|486
9C3H|1|S2|U|487
*
9C3H|1|S2|A2M|512
9C3H|1|S2|G|513
9C3H|1|S2|U|514
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SI
- Small ribosomal subunit protein eS8
- Chain SJ
- Small ribosomal subunit protein uS4
- Chain SX
- Small ribosomal subunit protein uS12
- Chain SY
- Isoform 3 of Small ribosomal subunit protein eS24
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