J3_9C3H_039

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9C3H_039 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.0814

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9C3H|1|S2|U|1350
9C3H|1|S2|G|1351
*
9C3H|1|S2|U|1360
9C3H|1|S2|G|1361
9C3H|1|S2|U|1362
9C3H|1|S2|C|1363
*
9C3H|1|S2|G|1375
9C3H|1|S2|A|1376
9C3H|1|S2|U|1377
9C3H|1|S2|A|1378
9C3H|1|S2|A|1379

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SC

Small ribosomal subunit protein uS5

Chain SS

Small ribosomal subunit protein eS17