J3_9C8K_003
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9C8K|1|1|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9C8K_003 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1523
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9C8K|1|1|A|938
9C8K|1|1|U|939
9C8K|1|1|U|940
9C8K|1|1|C|941
*
9C8K|1|1|G|985
9C8K|1|1|G|986
9C8K|1|1|A|987
9C8K|1|1|C|988
9C8K|1|1|C|989
9C8K|1|1|A|990
9C8K|1|1|G|991
9C8K|1|1|A|992
9C8K|1|1|G|993
*
9C8K|1|1|C|1000
9C8K|1|1|A|1001
9C8K|1|1|U|1002
9C8K|1|1|U|1003
9C8K|1|1|U|1004
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain B
- eS1
- Chain O
- Small ribosomal subunit protein uS11
- Chain a
- 40S ribosomal protein S26
Coloring options: