J3_9C8K_007
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 9C8K|1|1|G|1274, 9C8K|1|1|G|1507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9C8K_007 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1824
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9C8K|1|1|C|1272
9C8K|1|1|C|1273
9C8K|1|1|G|1274
9C8K|1|1|G|1275
9C8K|1|1|A|1276
9C8K|1|1|C|1277
*
9C8K|1|1|G|1320
9C8K|1|1|G|1321
9C8K|1|1|G|1322
9C8K|1|1|U|1323
9C8K|1|1|G|1324
*
9C8K|1|1|U|1504
9C8K|1|1|U|1505
9C8K|1|1|A|1506
9C8K|1|1|G|1507
9C8K|1|1|A|1508
9C8K|1|1|U|1509
9C8K|1|1|G|1510
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain K
- S10_plectin domain-containing protein
- Chain d
- uS14
- Chain f
- eS31
Coloring options: