J3_9CG5_028

3D structure

PDB id

9CG5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + UUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9CG5_028 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0427

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9CG5|1|a|G|1424
9CG5|1|a|G|1425
9CG5|1|a|G|1426
9CG5|1|a|A|1427
9CG5|1|a|C|1428
9CG5|1|a|G|1429
*
9CG5|1|a|C|1564
9CG5|1|a|C|1565
*
9CG5|1|a|G|1568
9CG5|1|a|A|1569
9CG5|1|a|A|1570
9CG5|1|a|A|1571
9CG5|1|a|A|1572
9CG5|1|a|G|1573
9CG5|1|a|C|1574

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2