J3_9CPA_002

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9CPA|1|2|A|46

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9CPA_002 not in the Motif Atlas

Geometric match to J3_8P9A_069

Geometric discrepancy: 0.1082

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9CPA|1|2|A|40
9CPA|1|2|G|41
9CPA|1|2|A|42
9CPA|1|2|U|43
9CPA|1|2|U|44
9CPA|1|2|A|45
9CPA|1|2|A|46
9CPA|1|2|G|47
*
9CPA|1|2|C|469
9CPA|1|2|G|470
9CPA|1|2|C|471
9CPA|1|2|G|472
9CPA|1|2|C|473
9CPA|1|2|A|474
9CPA|1|2|A|475
9CPA|1|2|A|476
9CPA|1|2|U|477
*
9CPA|1|2|A|502
9CPA|1|2|G|503
9CPA|1|2|U|504

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

uS12