J3_9CPA_004

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9CPA_004 not in the Motif Atlas

Geometric match to J3_8P9A_073

Geometric discrepancy: 0.1996

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

9CPA|1|2|A|812
9CPA|1|2|G|813
9CPA|1|2|A|814
9CPA|1|2|G|815
*
9CPA|1|2|C|825
9CPA|1|2|A|826
9CPA|1|2|G|827
*
9CPA|1|2|C|839
9CPA|1|2|U|840
9CPA|1|2|G|841
9CPA|1|2|G|842
9CPA|1|2|A|843
9CPA|1|2|U|844

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

Ribosomal protein S9 (Predicted)

Chain a

40S ribosomal protein S24