J3_9CPA_008
3D structure
- PDB id
- 9CPA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9CPA_008 not in the Motif Atlas
- Geometric match to J3_8CRE_079
- Geometric discrepancy: 0.0865
- The information below is about J3_8CRE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9CPA|1|2|U|1221
9CPA|1|2|G|1222
9CPA|1|2|G|1223
9CPA|1|2|A|1224
*
9CPA|1|2|U|1525
9CPA|1|2|A|1526
9CPA|1|2|C|1527
*
9CPA|1|2|G|1633
9CPA|1|2|G|1634
9CPA|1|2|A|1635
9CPA|1|2|A|1636
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
- Chain H
- Small ribosomal subunit protein uS7
- Chain S
- uS9
- Chain U
- uS13
- Chain V
- eS19
- Chain n
- eS25
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