J3_9CPA_010

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9CPA|1|2|G|1270, 9CPA|1|2|G|1503, 9CPA|1|2|U|1505

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9CPA_010 not in the Motif Atlas

Geometric match to J3_8CRE_081

Geometric discrepancy: 0.167

The information below is about J3_8CRE_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_87797.2

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

9CPA|1|2|C|1268
9CPA|1|2|C|1269
9CPA|1|2|G|1270
9CPA|1|2|G|1271
9CPA|1|2|A|1272
9CPA|1|2|C|1273
*
9CPA|1|2|G|1316
9CPA|1|2|G|1317
9CPA|1|2|G|1318
9CPA|1|2|U|1319
9CPA|1|2|G|1320
*
9CPA|1|2|U|1500
9CPA|1|2|U|1501
9CPA|1|2|A|1502
9CPA|1|2|G|1503
9CPA|1|2|A|1504
9CPA|1|2|U|1505
9CPA|1|2|G|1506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

S10_plectin domain-containing protein

Chain e

eS29

Chain f

Ribosomal protein S27a