J3_9CPA_011

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9CPA|1|2|U|1336
9CPA|1|2|C|1337
9CPA|1|2|U|1338
9CPA|1|2|U|1339
9CPA|1|2|A|1340
9CPA|1|2|G|1341
*
9CPA|1|2|C|1380
9CPA|1|2|G|1381
9CPA|1|2|A|1382
9CPA|1|2|G|1383
9CPA|1|2|A|1384
9CPA|1|2|C|1385
*
9CPA|1|2|G|1477
9CPA|1|2|C|1478
9CPA|1|2|A|1479
9CPA|1|2|A|1480
9CPA|1|2|U|1481
9CPA|1|2|A|1482

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain F

Ribosomal protein S3

Chain S

uS9

Chain T

eS17

Chain W

uS10

Chain e

eS29