J3_9CPA_012

3D structure

PDB id

9CPA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a Mammalian DHX29-bound 43S Pre-initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9CPA_012 not in the Motif Atlas

Geometric match to J3_8P9A_081

Geometric discrepancy: 0.1427

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9CPA|1|2|U|1346
9CPA|1|2|G|1347
*
9CPA|1|2|U|1356
9CPA|1|2|G|1357
9CPA|1|2|U|1358
9CPA|1|2|C|1359
*
9CPA|1|2|G|1371
9CPA|1|2|A|1372
9CPA|1|2|U|1373
9CPA|1|2|A|1374
9CPA|1|2|A|1375

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

uS2 (SA)

Chain E

Small ribosomal subunit protein uS5

Chain T

eS17