J3_9D0H_061

3D structure

PDB id

9D0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with C-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9D0H|1|2a|U|871, 9D0H|1|2a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0H_061 not in the Motif Atlas

Geometric match to J3_4LFB_001

Geometric discrepancy: 0.0936

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

9D0H|1|2a|C|826
9D0H|1|2a|U|827
9D0H|1|2a|A|828
9D0H|1|2a|G|829
*
9D0H|1|2a|C|857
9D0H|1|2a|G|858
9D0H|1|2a|A|859
9D0H|1|2a|A|860
9D0H|1|2a|G|861
*
9D0H|1|2a|C|868
9D0H|1|2a|G|869
9D0H|1|2a|U|870
9D0H|1|2a|U|871
9D0H|1|2a|A|872
9D0H|1|2a|A|873
9D0H|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2e

30S ribosomal protein S5

Chain 2h

30S ribosomal protein S8