J3_9D0I_040

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9D0I|1|2A|U|448, 9D0I|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0I_040 not in the Motif Atlas

Geometric match to J3_9DFE_003

Geometric discrepancy: 0.0736

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

9D0I|1|2A|C|32
9D0I|1|2A|U|33
9D0I|1|2A|C|34
9D0I|1|2A|G|35
*
9D0I|1|2A|C|445
9D0I|1|2A|G|446
9D0I|1|2A|A|447
9D0I|1|2A|U|448
9D0I|1|2A|A|449
9D0I|1|2A|G|450
9D0I|1|2A|C|451
9D0I|1|2A|G|452
9D0I|1|2A|C|453
9D0I|1|2A|A|454
9D0I|1|2A|C|455
9D0I|1|2A|C|456
9D0I|1|2A|A|457
9D0I|1|2A|G|458
9D0I|1|2A|U|459
9D0I|1|2A|A|460
9D0I|1|2A|C|461
*
9D0I|1|2A|G|468
9D0I|1|2A|G|469
9D0I|1|2A|A|470
9D0I|1|2A|A|471
9D0I|1|2A|A|472
9D0I|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23