J3_9D0I_072

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

9D0I|1|2a|U|1240, 9D0I|1|2a|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0I_072 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.0895

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

9D0I|1|2a|C|1237
9D0I|1|2a|A|1238
9D0I|1|2a|A|1239
9D0I|1|2a|U|1240
9D0I|1|2a|G|1241
*
9D0I|1|2a|C|1296
9D0I|1|2a|C|1297
9D0I|1|2a|C|1298
9D0I|1|2a|A|1299
9D0I|1|2a|G|1300
9D0I|1|2a|U|1301
9D0I|1|2a|U|1302
9D0I|1|2a|C|1303
*
9D0I|1|2a|G|1334
9D0I|1|2a|C|1335
9D0I|1|2a|C|1336
9D0I|1|2a|G|1337

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx