J3_9D0J_061

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9D0J|1|2a|U|871, 9D0J|1|2a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0J_061 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0703

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

9D0J|1|2a|C|826
9D0J|1|2a|U|827
9D0J|1|2a|A|828
9D0J|1|2a|G|829
*
9D0J|1|2a|C|857
9D0J|1|2a|G|858
9D0J|1|2a|A|859
9D0J|1|2a|A|860
9D0J|1|2a|G|861
*
9D0J|1|2a|C|868
9D0J|1|2a|G|869
9D0J|1|2a|U|870
9D0J|1|2a|U|871
9D0J|1|2a|A|872
9D0J|1|2a|A|873
9D0J|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8