J3_9D0J_066

3D structure

PDB id

9D0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with BT-33, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D0J_066 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1628

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9D0J|1|2a|C|990
9D0J|1|2a|U|991
9D0J|1|2a|U|992
9D0J|1|2a|G|993
9D0J|1|2a|A|994
9D0J|1|2a|C|995
9D0J|1|2a|A|996
9D0J|1|2a|U|997
*
9D0J|1|2a|A|1044
9D0J|1|2a|C|1045
9D0J|1|2a|A|1046
9D0J|1|2a|G|1047
*
9D0J|1|2a|C|1210
9D0J|1|2a|U|1211
9D0J|1|2a|U|1212
9D0J|1|2a|A|1213
9D0J|1|2a|C|1214
9D0J|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z