J3_9D7T_061

3D structure

PDB id

9D7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api137 antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9D7T|1|2a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D7T_061 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0788

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

9D7T|1|2a|C|826
9D7T|1|2a|U|827
9D7T|1|2a|A|828
9D7T|1|2a|G|829
*
9D7T|1|2a|C|857
9D7T|1|2a|G|858
9D7T|1|2a|A|859
9D7T|1|2a|A|860
9D7T|1|2a|G|861
*
9D7T|1|2a|C|868
9D7T|1|2a|G|869
9D7T|1|2a|U|870
9D7T|1|2a|U|871
9D7T|1|2a|A|872
9D7T|1|2a|A|873
9D7T|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8