3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
9D89|1|D|U|34, 9D89|1|D|U|448, 9D89|1|D|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9D89_003 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.042
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

9D89|1|D|C|32
9D89|1|D|C|33
9D89|1|D|U|34
9D89|1|D|G|35
*
9D89|1|D|C|445
9D89|1|D|G|446
9D89|1|D|A|447
9D89|1|D|U|448
9D89|1|D|A|449
9D89|1|D|G|450
9D89|1|D|U|451
9D89|1|D|G|452
9D89|1|D|A|453
9D89|1|D|A|454
9D89|1|D|C|455
9D89|1|D|C|456
9D89|1|D|A|457
9D89|1|D|G|458
9D89|1|D|U|459
9D89|1|D|A|460
9D89|1|D|C|461
*
9D89|1|D|G|468
9D89|1|D|G|469
9D89|1|D|A|470
9D89|1|D|A|471
9D89|1|D|A|472
9D89|1|D|G|473

Current chains

Chain D
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain H
50S ribosomal protein L4
Chain K
Large ribosomal subunit protein uL23
Chain p
Large ribosomal subunit protein bL20

Coloring options:


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