J3_9D89_003
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 9D89|1|D|U|34, 9D89|1|D|U|448, 9D89|1|D|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9D89_003 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.042
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
9D89|1|D|C|32
9D89|1|D|C|33
9D89|1|D|U|34
9D89|1|D|G|35
*
9D89|1|D|C|445
9D89|1|D|G|446
9D89|1|D|A|447
9D89|1|D|U|448
9D89|1|D|A|449
9D89|1|D|G|450
9D89|1|D|U|451
9D89|1|D|G|452
9D89|1|D|A|453
9D89|1|D|A|454
9D89|1|D|C|455
9D89|1|D|C|456
9D89|1|D|A|457
9D89|1|D|G|458
9D89|1|D|U|459
9D89|1|D|A|460
9D89|1|D|C|461
*
9D89|1|D|G|468
9D89|1|D|G|469
9D89|1|D|A|470
9D89|1|D|A|471
9D89|1|D|A|472
9D89|1|D|G|473
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain H
- 50S ribosomal protein L4
- Chain K
- Large ribosomal subunit protein uL23
- Chain p
- Large ribosomal subunit protein bL20
Coloring options: