J3_9D89_009
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 9D89|1|D|C|1609, 9D89|1|D|A|1611
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9D89_009 not in the Motif Atlas
- Homologous match to J3_5J7L_042
- Geometric discrepancy: 0.4046
- The information below is about J3_5J7L_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
9D89|1|D|C|1308
9D89|1|D|A|1309
9D89|1|D|A|1310
9D89|1|D|G|1311
*
9D89|1|D|C|1607
9D89|1|D|C|1608
9D89|1|D|C|1609
9D89|1|D|A|1610
9D89|1|D|A|1611
9D89|1|D|A|1612
9D89|1|D|C|1613
*
9D89|1|D|G|1622
9D89|1|D|U|1623
9D89|1|D|G|1624
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
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