3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
CAAG*CCCAAAC*GUG
Length
14 nucleotides
Bulged bases
9D89|1|D|C|1609, 9D89|1|D|A|1611
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9D89_009 not in the Motif Atlas
Homologous match to J3_5J7L_042
Geometric discrepancy: 0.4046
The information below is about J3_5J7L_042
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_19545.2
Basepair signature
cWW-F-F-tHS-cWW-cWW-F-F
Number of instances in this motif group
6

Unit IDs

9D89|1|D|C|1308
9D89|1|D|A|1309
9D89|1|D|A|1310
9D89|1|D|G|1311
*
9D89|1|D|C|1607
9D89|1|D|C|1608
9D89|1|D|C|1609
9D89|1|D|A|1610
9D89|1|D|A|1611
9D89|1|D|A|1612
9D89|1|D|C|1613
*
9D89|1|D|G|1622
9D89|1|D|U|1623
9D89|1|D|G|1624

Current chains

Chain D
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34

Coloring options:


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