J3_9D89_012

3D structure

PDB id

9D89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9D89|1|D|A|2202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9D89_012 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0473

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9D89|1|D|C|2095
9D89|1|D|U|2096
9D89|1|D|G|2097
*
9D89|1|D|C|2200
9D89|1|D|U|2201
9D89|1|D|A|2202
9D89|1|D|A|2203
9D89|1|D|C|2204
*
9D89|1|D|G|2227
9D89|1|D|G|2228
9D89|1|D|A|2229
9D89|1|D|C|2230
9D89|1|D|A|2231
9D89|1|D|G|2232

Current chains

Chain D

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L2

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28