J3_9D89_018
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 9D89|1|D|U|2837, 9D89|1|D|A|2839, 9D89|1|D|U|2888, 9D89|1|D|G|2889
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9D89_018 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1357
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
9D89|1|D|G|2816
9D89|1|D|A|2817
9D89|1|D|A|2818
9D89|1|D|C|2819
*
9D89|1|D|G|2835
9D89|1|D|U|2836
9D89|1|D|U|2837
9D89|1|D|G|2838
9D89|1|D|A|2839
9D89|1|D|U|2840
*
9D89|1|D|A|2886
9D89|1|D|A|2887
9D89|1|D|U|2888
9D89|1|D|G|2889
9D89|1|D|A|2890
9D89|1|D|A|2891
9D89|1|D|C|2892
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L17
- Chain M
- 50S ribosomal protein L32
- Chain r
- 50S ribosomal protein L22
Coloring options: