3D structure

PDB id
9D89 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.95 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
9D89|1|D|U|2837, 9D89|1|D|A|2839, 9D89|1|D|U|2888, 9D89|1|D|G|2889
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9D89_018 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1357
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

9D89|1|D|G|2816
9D89|1|D|A|2817
9D89|1|D|A|2818
9D89|1|D|C|2819
*
9D89|1|D|G|2835
9D89|1|D|U|2836
9D89|1|D|U|2837
9D89|1|D|G|2838
9D89|1|D|A|2839
9D89|1|D|U|2840
*
9D89|1|D|A|2886
9D89|1|D|A|2887
9D89|1|D|U|2888
9D89|1|D|G|2889
9D89|1|D|A|2890
9D89|1|D|A|2891
9D89|1|D|C|2892

Current chains

Chain D
23S rRNA

Nearby chains

Chain G
50S ribosomal protein L3
Chain J
50S ribosomal protein L17
Chain M
50S ribosomal protein L32
Chain r
50S ribosomal protein L22

Coloring options:


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