J3_9DFD_005
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 9DFD|1|1A|U|272|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DFD_005 not in the Motif Atlas
- Homologous match to J3_4WF9_022
- Geometric discrepancy: 0.158
- The information below is about J3_4WF9_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97971.2
- Basepair signature
- cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9DFD|1|1A|U|269
9DFD|1|1A|A|270
9DFD|1|1A|A|271
9DFD|1|1A|A|271|||A
9DFD|1|1A|C|271|||B
*
9DFD|1|1A|G|271|||V
9DFD|1|1A|G|271|||W
9DFD|1|1A|G|271|||X
9DFD|1|1A|U|271|||Y
9DFD|1|1A|C|271|||Z
9DFD|1|1A|G|272
9DFD|1|1A|U|272|||A
9DFD|1|1A|G|272|||B
*
9DFD|1|1A|C|366
9DFD|1|1A|G|370
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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