J3_9DFD_031
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 9DFD|1|1a|U|1212, 9DFD|1|1a|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DFD_031 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.1439
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28881.1
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9DFD|1|1a|C|990
9DFD|1|1a|U|991
9DFD|1|1a|U|992
9DFD|1|1a|G|993
9DFD|1|1a|A|994
9DFD|1|1a|C|995
9DFD|1|1a|A|996
9DFD|1|1a|U|997
*
9DFD|1|1a|A|1044
9DFD|1|1a|C|1045
9DFD|1|1a|A|1046
9DFD|1|1a|G|1047
*
9DFD|1|1a|C|1210
9DFD|1|1a|U|1211
9DFD|1|1a|U|1212
9DFD|1|1a|A|1213
9DFD|1|1a|C|1214
9DFD|1|1a|G|1215
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1n
- 30S ribosomal protein S14 type Z
- Chain 1z
- Lasso peptide lariocidin B
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