J3_9DFE_031
3D structure
- PDB id
- 9DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 9DFE|1|1a|U|1212, 9DFE|1|1a|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DFE_031 not in the Motif Atlas
- Homologous match to J3_6CZR_063
- Geometric discrepancy: 0.1339
- The information below is about J3_6CZR_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.1
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9DFE|1|1a|C|990
9DFE|1|1a|U|991
9DFE|1|1a|U|992
9DFE|1|1a|G|993
9DFE|1|1a|A|994
9DFE|1|1a|C|995
9DFE|1|1a|A|996
9DFE|1|1a|U|997
*
9DFE|1|1a|A|1044
9DFE|1|1a|C|1045
9DFE|1|1a|A|1046
9DFE|1|1a|G|1047
*
9DFE|1|1a|C|1210
9DFE|1|1a|U|1211
9DFE|1|1a|U|1212
9DFE|1|1a|A|1213
9DFE|1|1a|C|1214
9DFE|1|1a|G|1215
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1n
- 30S ribosomal protein S14 type Z
- Chain 1z
- Lasso peptide lariocidin
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