J3_9DFE_045
3D structure
- PDB id
- 9DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUAAG*CGG*UCAG
- Length
- 13 nucleotides
- Bulged bases
- 9DFE|1|2A|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DFE_045 not in the Motif Atlas
- Homologous match to J3_9DFE_010
- Geometric discrepancy: 0.0681
- The information below is about J3_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32852.6
- Basepair signature
- cWW-tSH-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9DFE|1|2A|C|1298
9DFE|1|2A|G|1299
9DFE|1|2A|U|1300
9DFE|1|2A|A|1301
9DFE|1|2A|A|1302
9DFE|1|2A|G|1303
*
9DFE|1|2A|C|1625
9DFE|1|2A|G|1626
9DFE|1|2A|G|1627
*
9DFE|1|2A|U|1639
9DFE|1|2A|C|1640
9DFE|1|2A|A|1641
9DFE|1|2A|G|1642
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: