3D structure

PDB id
9DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGUAAG*CGG*UCAG
Length
13 nucleotides
Bulged bases
9DFE|1|2A|A|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9DFE_045 not in the Motif Atlas
Homologous match to J3_9DFE_010
Geometric discrepancy: 0.0681
The information below is about J3_9DFE_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

9DFE|1|2A|C|1298
9DFE|1|2A|G|1299
9DFE|1|2A|U|1300
9DFE|1|2A|A|1301
9DFE|1|2A|A|1302
9DFE|1|2A|G|1303
*
9DFE|1|2A|C|1625
9DFE|1|2A|G|1626
9DFE|1|2A|G|1627
*
9DFE|1|2A|U|1639
9DFE|1|2A|C|1640
9DFE|1|2A|A|1641
9DFE|1|2A|G|1642

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1758 s