J3_9DFE_064

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

9DFE|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DFE_064 not in the Motif Atlas

Geometric match to J3_4LFB_005

Geometric discrepancy: 0.1849

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

9DFE|1|2a|C|990
9DFE|1|2a|U|991
9DFE|1|2a|U|992
9DFE|1|2a|G|993
*
9DFE|1|2a|C|1045
9DFE|1|2a|A|1046
9DFE|1|2a|G|1047
*
9DFE|1|2a|C|1210
9DFE|1|2a|U|1211
9DFE|1|2a|U|1212
9DFE|1|2a|A|1213
9DFE|1|2a|C|1214
9DFE|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z

Chain 2z

Lasso peptide lariocidin