J3_9DFE_067
3D structure
- PDB id
- 9DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DFE_067 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.0821
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9DFE|1|2a|C|1063
9DFE|1|2a|G|1064
9DFE|1|2a|U|1065
9DFE|1|2a|C|1066
9DFE|1|2a|A|1067
9DFE|1|2a|G|1068
*
9DFE|1|2a|C|1107
9DFE|1|2a|G|1108
9DFE|1|2a|C|1109
9DFE|1|2a|A|1110
9DFE|1|2a|A|1111
9DFE|1|2a|C|1112
9DFE|1|2a|C|1113
*
9DFE|1|2a|G|1187
9DFE|1|2a|A|1188
9DFE|1|2a|C|1189
9DFE|1|2a|G|1190
9DFE|1|2a|A|1191
9DFE|1|2a|C|1192
9DFE|1|2a|G|1193
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2c
- 30S ribosomal protein S3
- Chain 2e
- 30S ribosomal protein S5
- Chain 2g
- 30S ribosomal protein S7
- Chain 2i
- 30S ribosomal protein S9
- Chain 2j
- 30S ribosomal protein S10
- Chain 2n
- 30S ribosomal protein S14 type Z
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