J3_9DOV_008

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGA(A2M)CUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9DOV|1|A1|A2M|817, 9DOV|1|A1|G|924, 9DOV|1|A1|A|925

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|U|814
9DOV|1|A1|G|815
9DOV|1|A1|A|816
9DOV|1|A1|A2M|817
9DOV|1|A1|C|818
9DOV|1|A1|U|819
9DOV|1|A1|A|820
*
9DOV|1|A1|U|905
9DOV|1|A1|A|906
9DOV|1|A1|G|907
*
9DOV|1|A1|C|923
9DOV|1|A1|G|924
9DOV|1|A1|A|925
9DOV|1|A1|A|926

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AN

60S ribosomal protein L15-A

Chain Aj

60S ribosomal protein L37-A

Chain Al

60S ribosomal protein L39