J3_9DOV_012

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

9DOV|1|A1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|U|1479
9DOV|1|A1|G|1480
9DOV|1|A1|A|1481
9DOV|1|A1|A|1482
9DOV|1|A1|G|1483
9DOV|1|A1|U|1484
9DOV|1|A1|G|1485
*
9DOV|1|A1|C|1857
9DOV|1|A1|A|1858
9DOV|1|A1|A|1859
*
9DOV|1|A1|U|1871
9DOV|1|A1|C|1872
9DOV|1|A1|U|1873
9DOV|1|A1|A|1874

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain Ag

60S ribosomal protein L34-A