J3_9DOV_015
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGG*CCACCAU
- Length
- 24 nucleotides
- Bulged bases
- 9DOV|1|A1|C|1556, 9DOV|1|A1|A|1558, 9DOV|1|A1|A|1580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DOV_015 not in the Motif Atlas
- Homologous match to J3_9PN5_015
- Geometric discrepancy: 0.3514
- The information below is about J3_9PN5_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_53783.2
- Basepair signature
- cWW-tSH-tHW-F-tWW-F-tHS-F-cWW-cWW-F-tWW-F
- Number of instances in this motif group
- 3
Unit IDs
9DOV|1|A1|A|1537
9DOV|1|A1|G|1538
9DOV|1|A1|A|1539
9DOV|1|A1|U|1540
9DOV|1|A1|G|1541
9DOV|1|A1|G|1542
*
9DOV|1|A1|C|1551
9DOV|1|A1|G|1552
9DOV|1|A1|U|1553
9DOV|1|A1|U|1554
9DOV|1|A1|U|1555
9DOV|1|A1|C|1556
9DOV|1|A1|A|1557
9DOV|1|A1|A|1558
9DOV|1|A1|A|1559
9DOV|1|A1|G|1560
9DOV|1|A1|G|1561
*
9DOV|1|A1|C|1578
9DOV|1|A1|C|1579
9DOV|1|A1|A|1580
9DOV|1|A1|C|1581
9DOV|1|A1|C|1582
9DOV|1|A1|A|1583
9DOV|1|A1|U|1584
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- 60S ribosomal protein L8-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain AX
- 60S ribosomal protein L25
- Chain Aj
- 60S ribosomal protein L37-A
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