J3_9DOV_016

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DOV_016 not in the Motif Atlas

Homologous match to J3_9PN5_016

Geometric discrepancy: 0.0745

The information below is about J3_9PN5_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.4

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

9DOV|1|A1|C|1631
9DOV|1|A1|A|1632
*
9DOV|1|A1|U|1641
9DOV|1|A1|A|1642
9DOV|1|A1|A|1643
9DOV|1|A1|C|1644
9DOV|1|A1|U|1645
*
9DOV|1|A1|A|1810
9DOV|1|A1|G|1811

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AZ

60S ribosomal protein L27-A

Chain Ag

60S ribosomal protein L34-A