J3_9DOV_032
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9DOV|1|B5|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DOV|1|B5|A|881
9DOV|1|B5|U|882
9DOV|1|B5|C|883
9DOV|1|B5|A|884
*
9DOV|1|B5|U|928
9DOV|1|B5|A|929
9DOV|1|B5|A|930
9DOV|1|B5|C|931
9DOV|1|B5|U|932
9DOV|1|B5|A|933
9DOV|1|B5|C|934
9DOV|1|B5|U|935
9DOV|1|B5|G|936
*
9DOV|1|B5|C|943
9DOV|1|B5|A|944
9DOV|1|B5|U|945
9DOV|1|B5|U|946
9DOV|1|B5|U|947
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BB
- Small ribosomal subunit protein eS1A
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- Small ribosomal subunit protein eS26B
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