J3_9DOV_034

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|B5|C|1161
9DOV|1|B5|C|1162
9DOV|1|B5|A|1163
9DOV|1|B5|G|1164
*
9DOV|1|B5|C|1581
9DOV|1|B5|U|1582
9DOV|1|B5|A|1583
9DOV|1|B5|G|1584
9DOV|1|B5|U|1585
9DOV|1|B5|A|1586
9DOV|1|B5|A|1587
*
9DOV|1|B5|U|1609
9DOV|1|B5|G|1610
9DOV|1|B5|A|1611
9DOV|1|B5|U|1612
9DOV|1|B5|U|1613
9DOV|1|B5|A|1614
9DOV|1|B5|C|1615
9DOV|1|B5|G|1616

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BQ

40S ribosomal protein S16-A

Chain Bc

Small ribosomal subunit protein eS28A