J3_9DP7_005

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AUGAAAAG*CG*CU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|A|369
9DP7|1|A1|U|370
9DP7|1|A1|G|371
9DP7|1|A1|A|372
9DP7|1|A1|A|373
9DP7|1|A1|A|374
9DP7|1|A1|A|375
9DP7|1|A1|G|376
*
9DP7|1|A1|C|403
9DP7|1|A1|G|404
*
9DP7|1|A4|C|19
9DP7|1|A4|U|20

Current chains

Chain A1

25S rRNA

Chain A4

5.8S rRNA

Nearby chains

Chain AC

Large ribosomal subunit protein uL4A

Chain AY

60S ribosomal protein L26-A

Chain Al

60S ribosomal protein L39