J3_9DP7_007
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 9DP7|1|A1|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|U|502
9DP7|1|A1|C|503
*
9DP7|1|A1|G|588
9DP7|1|A1|A|589
9DP7|1|A1|G|590
9DP7|1|A1|G|591
9DP7|1|A1|A|592
9DP7|1|A1|C|593
9DP7|1|A1|U|594
9DP7|1|A1|G|595
9DP7|1|A1|C|596
9DP7|1|A1|G|597
*
9DP7|1|A1|C|606
9DP7|1|A1|A|607
9DP7|1|A1|A|608
9DP7|1|A1|G|609
9DP7|1|A1|G|610
9DP7|1|A1|A|611
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- Large ribosomal subunit protein uL4A
- Chain AE
- 60S ribosomal protein L6-A
- Chain AF
- 60S ribosomal protein L7-A
- Chain Ae
- Large ribosomal subunit protein eL32
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