J3_9DP7_018
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- 9DP7|1|A1|U|2514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9DP7_018 not in the Motif Atlas
- Homologous match to J3_9PN5_018
- Geometric discrepancy: 0.0554
- The information below is about J3_9PN5_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63968.2
- Basepair signature
- cWW-cWW-F-F-cWW-F-tWH-tHS-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9DP7|1|A1|A|2432
9DP7|1|A1|U|2433
9DP7|1|A1|U|2434
9DP7|1|A1|G|2435
*
9DP7|1|A1|C|2512
9DP7|1|A1|U|2513
9DP7|1|A1|U|2514
9DP7|1|A1|A|2515
9DP7|1|A1|U|2516
9DP7|1|A1|U|2517
*
9DP7|1|A1|A|2590
9DP7|1|A1|A|2591
9DP7|1|A1|G|2592
9DP7|1|A1|A|2593
9DP7|1|A1|C|2594
9DP7|1|A1|A|2595
9DP7|1|A1|U|2596
9DP7|1|A1|U|2597
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- 60S ribosomal protein L8-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Ai
- 60S ribosomal protein L36-A
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