J3_9E0N_012

3D structure

PDB id

9E0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis unmethylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

9E0N|1|A|C|1460, 9E0N|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E0N_012 not in the Motif Atlas

Geometric match to J3_7A0S_018

Geometric discrepancy: 0.2065

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

9E0N|1|A|U|1459
9E0N|1|A|C|1460
9E0N|1|A|G|1461
9E0N|1|A|G|1462
9E0N|1|A|G|1463
9E0N|1|A|A|1464
9E0N|1|A|C|1465
*
9E0N|1|A|G|1496
9E0N|1|A|A|1497
9E0N|1|A|C|1498
9E0N|1|A|A|1499
9E0N|1|A|A|1500
*
9E0N|1|A|U|1517
9E0N|1|A|A|1518

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL23