J3_9E0N_016
3D structure
- PDB id
- 9E0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis unmethylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- GCC*GACUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9E0N|1|A|U|2614, 9E0N|1|A|A|2650
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0N_016 not in the Motif Atlas
- Geometric match to J3_9E6Q_015
- Geometric discrepancy: 0.3252
- The information below is about J3_9E6Q_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9E0N|1|A|G|2506
9E0N|1|A|C|2507
9E0N|1|A|C|2508
*
9E0N|1|A|G|2608
9E0N|1|A|A|2609
9E0N|1|A|C|2610
9E0N|1|A|U|2611
9E0N|1|A|A|2612
9E0N|1|A|G|2613
9E0N|1|A|U|2614
9E0N|1|A|G|2615
9E0N|1|A|A|2616
9E0N|1|A|U|2617
9E0N|1|A|C|2618
9E0N|1|A|C|2619
*
9E0N|1|A|G|2645
9E0N|1|A|C|2646
9E0N|1|A|U|2647
9E0N|1|A|C|2648
9E0N|1|A|A|2649
9E0N|1|A|A|2650
9E0N|1|A|C|2651
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL33A
- Chain 6
- Large ribosomal subunit protein bL35
- Chain M
- Large ribosomal subunit protein uL15
- Chain X
- Large ribosomal subunit protein bL27
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