J3_9E0N_017
3D structure
- PDB id
- 9E0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis unmethylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 9E0N|1|A|C|2558, 9E0N|1|A|A|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0N_017 not in the Motif Atlas
- Geometric match to J3_4V9F_008
- Geometric discrepancy: 0.1941
- The information below is about J3_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9E0N|1|A|C|2519
9E0N|1|A|U|2520
9E0N|1|A|C|2521
*
9E0N|1|A|G|2545
9E0N|1|A|A|2546
9E0N|1|A|G|2547
*
9E0N|1|A|C|2556
9E0N|1|A|A|2557
9E0N|1|A|C|2558
9E0N|1|A|A|2559
9E0N|1|A|A|2560
9E0N|1|A|G|2561
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- Large ribosomal subunit protein uL5
- Chain P
- Large ribosomal subunit protein uL18
- Chain X
- Large ribosomal subunit protein bL27
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