J3_9E0P_008
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- UGAUCUA*UAG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9E0P|1|A|U|801, 9E0P|1|A|A|907, 9E0P|1|A|A|908
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0P_008 not in the Motif Atlas
- Geometric match to J3_8P9A_049
- Geometric discrepancy: 0.1488
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9E0P|1|A|U|798
9E0P|1|A|G|799
9E0P|1|A|A|800
9E0P|1|A|U|801
9E0P|1|A|C|802
9E0P|1|A|U|803
9E0P|1|A|A|804
*
9E0P|1|A|U|888
9E0P|1|A|A|889
9E0P|1|A|G|890
*
9E0P|1|A|C|906
9E0P|1|A|A|907
9E0P|1|A|A|908
9E0P|1|A|A|909
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL34
- Chain C
- Large ribosomal subunit protein uL2
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