J3_9E0P_028
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- CGGA*UAC*GGAG
- Length
- 11 nucleotides
- Bulged bases
- 9E0P|1|a|G|1320, 9E0P|1|a|A|1321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0P_028 not in the Motif Atlas
- Geometric match to J3_8CRE_079
- Geometric discrepancy: 0.2285
- The information below is about J3_8CRE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9E0P|1|a|C|925
9E0P|1|a|G|926
9E0P|1|a|G|927
9E0P|1|a|A|928
*
9E0P|1|a|U|1216
9E0P|1|a|A|1217
9E0P|1|a|C|1218
*
9E0P|1|a|G|1319
9E0P|1|a|G|1320
9E0P|1|a|A|1321
9E0P|1|a|G|1322
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain i
- Small ribosomal subunit protein uS9
- Chain m
- Small ribosomal subunit protein uS13
Coloring options: