J3_9E0P_029
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- AUUAAUUC*GAAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 9E0P|1|a|A|957, 9E0P|1|a|G|958, 9E0P|1|a|A|960
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0P_029 not in the Motif Atlas
- Geometric match to J3_8CRE_080
- Geometric discrepancy: 0.301
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9E0P|1|a|A|937
9E0P|1|a|U|938
9E0P|1|a|U|939
9E0P|1|a|A|940
9E0P|1|a|A|941
9E0P|1|a|U|942
9E0P|1|a|U|943
9E0P|1|a|C|944
*
9E0P|1|a|G|955
9E0P|1|a|A|956
9E0P|1|a|A|957
9E0P|1|a|G|958
9E0P|1|a|A|959
9E0P|1|a|A|960
9E0P|1|a|C|961
9E0P|1|a|C|962
9E0P|1|a|U|963
9E0P|1|a|U|964
9E0P|1|a|A|965
9E0P|1|a|C|966
*
9E0P|1|a|G|1202
9E0P|1|a|G|1203
9E0P|1|a|C|1204
9E0P|1|a|U|1205
9E0P|1|a|U|1206
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain j
- Small ribosomal subunit protein uS10
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14B
- Chain s
- Small ribosomal subunit protein uS19
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