J3_9E0P_033
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0P_033 not in the Motif Atlas
- Geometric match to J3_4LFB_007
- Geometric discrepancy: 0.1979
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9E0P|1|a|C|1043
9E0P|1|a|G|1044
9E0P|1|a|U|1045
9E0P|1|a|C|1046
9E0P|1|a|A|1047
9E0P|1|a|G|1048
*
9E0P|1|a|C|1087
9E0P|1|a|G|1088
9E0P|1|a|C|1089
9E0P|1|a|A|1090
9E0P|1|a|A|1091
9E0P|1|a|C|1092
9E0P|1|a|C|1093
*
9E0P|1|a|G|1168
9E0P|1|a|A|1169
9E0P|1|a|U|1170
9E0P|1|a|G|1171
9E0P|1|a|A|1172
9E0P|1|a|C|1173
9E0P|1|a|G|1174
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain e
- Small ribosomal subunit protein uS5
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14B
Coloring options: