J3_9E0P_034

3D structure

PDB id

9E0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. smegmatis methylated 70S ribosome structure

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

9E0P|1|a|A|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E0P_034 not in the Motif Atlas

Geometric match to J3_5J7L_009

Geometric discrepancy: 0.2317

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9E0P|1|a|U|1053
9E0P|1|a|G|1054
*
9E0P|1|a|U|1063
9E0P|1|a|G|1064
9E0P|1|a|U|1065
9E0P|1|a|U|1066
9E0P|1|a|G|1067
*
9E0P|1|a|C|1078
9E0P|1|a|G|1079
9E0P|1|a|C|1080
9E0P|1|a|A|1081
9E0P|1|a|A|1082

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

Small ribosomal subunit protein uS2

Chain e

Small ribosomal subunit protein uS5