J3_9E0P_037
3D structure
- PDB id
- 9E0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. smegmatis methylated 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GUCG
- Length
- 17 nucleotides
- Bulged bases
- 9E0P|1|a|U|1221, 9E0P|1|a|U|1284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E0P_037 not in the Motif Atlas
- Geometric match to J3_4LFB_009
- Geometric discrepancy: 0.2063
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
9E0P|1|a|C|1218
9E0P|1|a|A|1219
9E0P|1|a|A|1220
9E0P|1|a|U|1221
9E0P|1|a|G|1222
*
9E0P|1|a|C|1278
9E0P|1|a|U|1279
9E0P|1|a|C|1280
9E0P|1|a|A|1281
9E0P|1|a|G|1282
9E0P|1|a|U|1283
9E0P|1|a|U|1284
9E0P|1|a|C|1285
*
9E0P|1|a|G|1316
9E0P|1|a|U|1317
9E0P|1|a|C|1318
9E0P|1|a|G|1319
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- Small ribosomal subunit protein uS7
- Chain m
- Small ribosomal subunit protein uS13
Coloring options: