J3_9E16_013

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9E16|1|I|A|1844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E16_013 not in the Motif Atlas

Homologous match to J3_8B0X_019

Geometric discrepancy: 0.1091

The information below is about J3_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9E16|1|I|C|1437
9E16|1|I|A|1438
9E16|1|I|A|1439
9E16|1|I|G|1440
*
9E16|1|I|C|1840
9E16|1|I|C|1841
9E16|1|I|C|1842
9E16|1|I|A|1843
9E16|1|I|A|1844
9E16|1|I|A|1845
9E16|1|I|C|1846
*
9E16|1|I|G|1855
9E16|1|I|U|1856
9E16|1|I|G|1857

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34