J3_9E1S_014
3D structure
- PDB id
- 9E1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.39 Å
Loop
- Sequence
- UCGGGAC*GACAA*UA
- Length
- 14 nucleotides
- Bulged bases
- 9E1S|1|I|C|1476, 9E1S|1|I|A|1515
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E1S_014 not in the Motif Atlas
- Homologous match to J3_7A0S_018
- Geometric discrepancy: 0.1778
- The information below is about J3_7A0S_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.3
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9E1S|1|I|U|1475
9E1S|1|I|C|1476
9E1S|1|I|G|1477
9E1S|1|I|G|1478
9E1S|1|I|G|1479
9E1S|1|I|A|1480
9E1S|1|I|C|1481
*
9E1S|1|I|G|1512
9E1S|1|I|A|1513
9E1S|1|I|C|1514
9E1S|1|I|A|1515
9E1S|1|I|A|1516
*
9E1S|1|I|U|1533
9E1S|1|I|A|1534
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain T
- 50S ribosomal protein L23
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