J3_9E6Q_005
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CAAAC*GGGCUUG*CGG
- Length
- 15 nucleotides
- Bulged bases
- 9E6Q|1|1|U|293
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E6Q_005 not in the Motif Atlas
- Homologous match to J3_4V9F_001
- Geometric discrepancy: 0.2454
- The information below is about J3_4V9F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_06335.1
- Basepair signature
- cWW-F-F-tSH-cSS-tWH-F-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9E6Q|1|1|C|250
9E6Q|1|1|A|251
9E6Q|1|1|A|252
9E6Q|1|1|A|253
9E6Q|1|1|C|254
*
9E6Q|1|1|G|288
9E6Q|1|1|G|289
9E6Q|1|1|G|290
9E6Q|1|1|C|291
9E6Q|1|1|U|292
9E6Q|1|1|U|293
9E6Q|1|1|G|294
*
9E6Q|1|1|C|402
9E6Q|1|1|G|403
9E6Q|1|1|G|404
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AF
- Large ribosomal subunit protein eL8
- Chain AH
- Large ribosomal subunit protein eL13
- Chain AM
- 50S ribosomal protein L15e
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