J3_9E6Q_009
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CGGAAAG*CUG*CAAG
- Length
- 14 nucleotides
- Bulged bases
- 9E6Q|1|1|G|1428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E6Q_009 not in the Motif Atlas
- Geometric match to J3_4V9F_006
- Geometric discrepancy: 0.2625
- The information below is about J3_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
9E6Q|1|1|C|1426
9E6Q|1|1|G|1427
9E6Q|1|1|G|1428
9E6Q|1|1|A|1429
9E6Q|1|1|A|1430
9E6Q|1|1|A|1431
9E6Q|1|1|G|1432
*
9E6Q|1|1|C|1768
9E6Q|1|1|U|1769
9E6Q|1|1|G|1770
*
9E6Q|1|1|C|1782
9E6Q|1|1|A|1783
9E6Q|1|1|A|1784
9E6Q|1|1|G|1785
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AQ
- Large ribosomal subunit protein eL19
- Chain Ac
- Large ribosomal subunit protein eL34
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