J3_9E6Q_017
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CAUC*GUGG*CAUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 9E6Q|1|1|A|2632, 9E6Q|1|1|U|2633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E6Q_017 not in the Motif Atlas
- Homologous match to J3_4V9F_009
- Geometric discrepancy: 0.0693
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69441.1
- Basepair signature
- cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 1
Unit IDs
9E6Q|1|1|C|2631
9E6Q|1|1|A|2632
9E6Q|1|1|U|2633
9E6Q|1|1|C|2634
*
9E6Q|1|1|G|2659
9E6Q|1|1|U|2660
9E6Q|1|1|G|2661
9E6Q|1|1|G|2662
*
9E6Q|1|1|C|2674
9E6Q|1|1|A|2675
9E6Q|1|1|U|2676
9E6Q|1|1|U|2677
9E6Q|1|1|A|2678
9E6Q|1|1|A|2679
9E6Q|1|1|A|2680
9E6Q|1|1|G|2681
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain AB
- Large ribosomal subunit protein uL3
- Chain AG
- Large ribosomal subunit protein uL13
- Chain AI
- Large ribosomal subunit protein uL14
Coloring options: